Field Activity 2021-313-FA

Identifier 2021-313-FA
Purpose Collect SQUID-5 imagery for structure-from-motion processing as part of collaboration with NOAA's Mission: Iconic Reefs project
Location Eastern Dry Rocks reef off the coast of Key West, FL
Summary This field work was led by Jon Warrick (PCMSC). See data release https://cmgds.marine.usgs.gov/data-releases/datarelease/10.5066-P93RIIG9/
Info derived Digital images, point clouds, DEMs
Itinerary
Start St. Petersburg, FL 2021-05-04
End St. Petersburg, FL 2021-05-20
Days in the field 10
Bounds
West -82.01840786
East -81.80420747
North 24.64701716
South 24.35710549
Marine operations Yes

Personnel

Organization
600 Fourth Street South
St. Petersburg, FL33701-4846
(727) 502-8000
Organization
National Oceanic and Atmospheric Administration(NOAA)
Organization
2885 Mission Street
Santa Cruz, CA95060
(831) 460-7401
Principal investigators Kimberly K YatesDavid G Zawada
Crew members
Christine Kranenburg
Scientist, Staff
Hunter S Wilcox
Scientist, Staff
Information specialist(s)
Christine Kranenburg
Specialist, Information
Affiliate principal Jon Warrick (PCMSC) Gerry Hatcher (PCMSC) Megan Fraser (NOAA) Lisa Symons (NOAA) Andrew Bruckner (NOAA)

Data types and categories

Data category: Imagery
Data type: Photo

Equipment used

Equipment Usage description Data types Datasets
SQUID-5 Photo 5
Other Photo, Video, Other Imagery, Satellite (no data reported)

Datasets

Datasets produced in this activity

Dataset name Equipment Description Dataset contact
Bathymetric digital elevation model (DEM) of Eastern Dry Rocks coral reef, Florida, 2021 SQUID-5 A digital elevation model (DEM) was created from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system. The underwater images were processed using Structure-from-Motion (SfM) photogrammetry techniques into a classified two-class ('unclassified' and 'low noise') 3D point cloud. The DEM was derived in Metashape (ver. 1.6.5) from the point cloud, but it excludes the 'low noise' class. The DEM covers a rectangular area of seafloor approximately 800x160 meters (0.12 square kilometers) in size and was saved as a tiled GeoTIFF raster at 1-cm resolution. Gerald Hatcher
GNSS locations of seabed images collected at Eastern Dry Rocks coral reef, Florida, 2021 SQUID-5 This text file (SQUID5_EDR_2021_Image_Locations.txt) provides the GNSS antenna location for underwater images collected at Eastern Dry Rocks coral reef, near Key West, Florida, in May 2021, using the SQUID5 Structure-from-Motion (SfM) system, a towed-surface vehicle with five downward-looking underwater cameras developed by the U.S. Geological Survey. The GNSS antenna location for the time of each image capture is presented with greater precision than is stored in the individual image's EXIF header due to decimal place limitations of the EXIF format. Gerald Hatcher
Orthoimagery of Eastern Dry Rocks coral reef, Florida, 2021 SQUID-5 A seabed orthoimage was developed from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system. The underwater images were processed using Structure-from-Motion (SfM) photogrammetry techniques. The orthoimage covers a rectangular area of seafloor approximately 800x160 meters (0.12 square kilometers) in size, and it was created using image-mosaicking methods and saved as a tiled, 5-mm resolution raster. Gerald Hatcher
Overlapping seabed images collected at Eastern Dry Rocks coral reef, Florida, 2021 SQUID-5 Underwater images totaling 138,733 in number were collected at Eastern Dry Rocks coral reef, near Key West, Florida, in May 2021, using the SQUID5 Structure-from-Motion (SfM) system, a towed-surface vehicle with five downward-looking underwater cameras developed by the U.S. Geological Survey. The images are organized in zipped files grouped by survey line. The SQUID-5 records images as TIFF (.tif) format to maintain the highest resolution and bit depth. Each image includes EXIF metadata, containing GNSS date, time, latitude, longitude, and altitude of the GNSS antenna mounted on the towed surface vehicle, copyright, keywords, and other fields. Gerald Hatcher
Point cloud data of Eastern Dry Rocks coral reef, Florida, 2021 SQUID-5 A three-dimensional point cloud (LAZ format) was developed from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system and processed using Structure-from-Motion (SfM) photogrammetry techniques. Point cloud data include x,y,z positions, RGB colors, Metashape-computed confidence values, and a two-class classification ('unclassified' and 'low noise') derived from the confidence values. LAS (and its compressed form, LAZ) is an open format developed for the efficient use of point cloud lidar data. A description of the LAZ format and links to software tools for using LAZ files are provided at the USGS website: https://www.usgs.gov/news/3d-elevation-program-distributing-lidar-data-laz-format Gerald Hatcher

Publications

Samples collected during this field activity